dbGENVOC search result

Search results

Exome

Whole Genome

Variations from dbGENVOC

Search term chr1:915188-1015188 returned results from Exome Somatic dbGENVOC section.

OSCC_GB: Gingivo-buccal oral squamous cell carcinoma

DBID	Gene name	Entrez Id	Disease	Chrom	Start	End	Genome change	UCSC Browser	cDNA change	Codon change	Protein change	Variant class	Variant type	Referrence Allele	Tumor Allele	dbSNP ID	Sample id	Annotation transcript	Transcript strand	Transcript exon	Transcript position	Reference
esm14909	C1orf170	0	OSCC_GB	chr1	915858	915858	g.chr1:915858C>G	chr1:915858-915858	c.210G>C	c.(208-210)aaG>aaC	p.K70N	Missense_Mutation	SNP	C	G	-	NIBMG-H721-GB	ENST00000341290.2	-	3	245	NIBMG
esm13503	AGRN	375790	OSCC_GB	chr1	976991	976991	g.chr1:976991C>T	chr1:976991-976991	c.1086C>T	c.(1084-1086)gtC>gtT	p.V362V	Silent	SNP	C	T	-	NIBMG-C761-GB	ENST00000379370.2	+	6	1136	NIBMG

Graphical Representation of dbGENVOC variations

Variations from TCGA (Exome somatic specific)

Search term chr1:915188-1015188 returned results from TCGA Exome Somatic Variation section.

BM-TCGA: Buccal Mucosa; OC-TCGA: Oral Cavity; OT-TCGA: Oral Tongue

NOTE: Data from Head and Neck Squamous Cell carcinoma project of TCGA (HNSCC-TCGA)

DBID	Gene name	Entrez Id	Disease	Chrom	Start	End	Genome change	UCSC Browser	cDNA change	Codon change	Protein change	Variant class	Variant type	Referrence Allele	Tumor Allele	dbSNP ID	Sample Id	Annotation transcript	Transcript strand	Transcript exon	Transcript position	Reference
tcga4231	HES4	57801	OT-TCGA	chr1	934936	934936	g.chr1:934936G>A	chr1:934936-934936	c.262C>T	c.(262-264)Ctg>Ttg	p.L88L	Silent	SNP	G	A	rs375139682	TCGA-CQ-A4CE-01A-11D	ENST00000304952.6	-	3	399	TCGA
tcga6792	AGRN	375790	OT-TCGA	chr1	977519	977519	g.chr1:977519C>A	chr1:977519-977519	c.1361C>A	c.(1360-1362)cCc>cAc	p.P454H	Missense_Mutation	SNP	C	A		TCGA-CV-6933-01A-11D	ENST00000379370.2	+	7	1411	TCGA
tcga6987	AGRN	375790	OT-TCGA	chr1	977519	977519	g.chr1:977519C>A	chr1:977519-977519	c.1361C>A	c.(1360-1362)cCc>cAc	p.P454H	Missense_Mutation	SNP	C	A		TCGA-CV-6933-01A-11D	ENST00000379370.2	+	7	1411	TCGA
tcga45467	AGRN	375790	OC-TCGA	chr1	980739	980748	g.chr1:980739_980748delGTGCCTGCCA	chr1:980739-980748	c.2372_2381delGTGCCTGCCA	c.(2371-2382)agtgcctgccag>ag	p.SACQ791fs	Splice_Site	DEL	GTGCCTGCCA	-		TCGA-HD-A633-01A-11D	ENST00000379370.2	+	14	2422_2431	TCGA
tcga17984	AGRN	375790	OT-TCGA	chr1	981638	981638	g.chr1:981638G>A	chr1:981638-981638	c.2904G>A	c.(2902-2904)ccG>ccA	p.P968P	Silent	SNP	G	A		TCGA-P3-A5QA-01A-11D	ENST00000379370.2	+	17	2954	TCGA
tcga23278	AGRN	375790	BM-TCGA	chr1	983037	983037	g.chr1:983037C>T	chr1:983037-983037	c.3601C>T	c.(3601-3603)Cgc>Tgc	p.R1201C	Missense_Mutation	SNP	C	T		TCGA-F7-A624-01A-22D	ENST00000379370.2	+	21	3651	TCGA
tcga17985	AGRN	375790	OT-TCGA	chr1	985004	985004	g.chr1:985004G>A	chr1:985004-985004	c.4573G>A	c.(4573-4575)Gtc>Atc	p.V1525I	Missense_Mutation	SNP	G	A		TCGA-P3-A5QA-01A-11D	ENST00000379370.2	+	26	4623	TCGA
tcga27367	AGRN	375790	OC-TCGA	chr1	985677	985677	g.chr1:985677G>C	chr1:985677-985677	c.4944G>C	c.(4942-4944)ctG>ctC	p.L1648L	Silent	SNP	G	C		TCGA-CN-4740-01A-01D	ENST00000379370.2	+	28	4994	TCGA

Graphical Representation of TCGA data

Variations from peer-reviewed papers

OSCC: Oral Squamous Cell Carcinoma OTSCC: Oral Tongue Squamous Cell Carcinoma

DBID	Gene name	Entrez Id	Disease	Chrom	Start	End	Genome change	UCSC Browser	cDNA change	Codon change	Protein change	Variant class	Variant type	Referrence Allele	Tumor Allele	dbSNP ID	Sample Id	Annotation transcript	Transcript strand	Transcript exon	Transcript position	Reference
esj32914	HES4(nearby)	57801	OSCC	chr1	934239	934239	g.chr1:934239C>A	chr1:934239-934239				IGR	SNP	C	A		Sample_P62	ENST00000304952.6	-	0	899	28878238
esj30847	AGRN	375790	OSCC	chr1	957967	957968	g.chr1:957967_957968insTGTAGTCTGACCTGTGGTCTGAC	chr1:957967-957968				Intron	INS	-	TGTAGTCTGACCTGTGGTCTGAC	rs370228299\|rs6143083\|rs142586152\|rs141489152	Sample_P48	ENST00000379370.2	+	2	513	28878238
esj1168	AGRN	375790	OTSCC	chr1	980460	980460	g.chr1:980460G>A	chr1:980460-980460				Intron	SNP	G	A	rs3128097	OT34	ENST00000379370.2	+	13	2304	26834999
esj1169	AGRN	375790	OTSCC	chr1	981858	981858	g.chr1:981858C>T	chr1:981858-981858	c.2993C>T	c.(2992-2994)cCg>cTg	p.P998L	Missense_Mutation	SNP	C	T	rs200807722	OT6	ENST00000379370.2	+	18	3043	26834999
esj24406	AGRN	375790	OSCC	chr1	983807	983807	g.chr1:983807T>G	chr1:983807-983807				Intron	SNP	T	G		Sample_P51	ENST00000379370.2	+	23	4155	28878238
esj28234	AGRN	375790	OSCC	chr1	984428	984428	g.chr1:984428C>A	chr1:984428-984428	c.4287C>A	c.(4285-4287)cgC>cgA	p.R1429R	Silent	SNP	C	A	rs540390242	Sample_P62	ENST00000379370.2	+	24	4337	28878238
esj25703	AGRN	375790	OSCC	chr1	986403	986403	g.chr1:986403G>A	chr1:986403-986403				Intron	SNP	G	A		Sample_P55	ENST00000379370.2	+	30	5303	28878238

Graphical Representation of peer-reviewed paper data